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 Research Supplementary Material

​Distinctive Phenotype Identification For Breast Cancer Genotypes Among Hereditary Breast Cancer Mutated Genes

Current Bioinformatics [Year];[Volume]:[Pages] 

Md. Rafiul Hassan1†, Imran ul Haque1, Emad Ramadan1, Joarder Kamruzzaman2, and Adel F. Ahmed1
1 Information and Computer Science department, College of Computer Science and Engineering, King Fahd Univeristy of Petroleum and Minerals, Dhahran 31921
2  Gippsland School of Information Technology, Monash University
†Corresponding author Md. Rafiul Hassan (mrhassan@kfupm.edu.sa​)
 
Software

MATLAB code for our hybrid method with a one-window GUI software that runs the MATLAB code and displays the results. [Download rar file].
Transcription Factors batch and jar files with TRANSFAC dataset. [Download rar file].
GSEA results of our identified genes with 11 other studies. [Download rar file].

Note: Kindly see the README file in each archive (rar file) to see how to run the program/code.
 
Documents

List of 3226 genes from Hedenfalk's paper [Download PDF file].
Proposed Model (AUC & HMM) [Download PDF file].
List of identified genes for different threshold values [Download Excel file].
List of identified genes for different threshold values and diseases associated [Download Excel file ].
List of 8 important genes identified by our model [Download Excel file ].

Figures

Detailed Protein-Protein Interaction network of our identified genes with BRCA1 and BRCA2 [Download PDF file].
Detailed Protein-Protein Interaction network of immediate neighbours of BRCA1 and BRCA2 [Download PDF file].
Transcription Factors covering our genes and BRCA1 and BRCA2 [Download PDF file].
Venn diagram showing our identified genes with other cancer studies [Download PDF file​].

MISCELLANEOUS

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